Utilities for writing tests that use Apache Spark.

Miscellaneous functionality for manipulating Apache Spark RDDs.

Load genomic BAM files using Apache Spark

type-classes for structural manipulation of algebraic data types

low-level helpers for Apache Spark libraries and tests

SBT plugins for publishing to Maven Central, shading and managing dependencies, reporting to Coveralls from TravisCI, and more

Math and statistics utilities

Enrichment-methods for Scala collections (Iterators, Iterables, Arrays)

Helpers for creating command-line applications

Libraries for console/file I/O, processing/formatting sizes in bytes, etc.

Scala convenience-wrapper for java.nio.file.Path

General (non-omics) code used across BDG products. Apache 2 licensed.

String/CSV utilities

Utilities for representing genomic loci and reference-genomes

Library for representing and working with genomic-sequencing reads.

A genomics processing engine and specialized file format built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

sbt plugin to create a dependency graph for your project

Spark-based implementation of pDC3, a linear-time parallel suffix-array-construction algorithm

Library for representing and working with sets of genomic-sequencing reads, e.g. BAM files.

Stand-alone utility for filtering a BAM file to specific genomic regions, using Apache Spark.